# wes\-variant\-calling\-pipeline

[DecompHub listing](<https://app.decomphub.com/projects/wes-variant-calling-pipeline>) · [JSON record](<https://app.decomphub.com/data/projects/wes-variant-calling-pipeline.json>)

## Description

> Reproducible Nextflow and Docker reimplementation of a whole\-exome sequencing variant\-calling pipeline \(FastQC, FASTP, BWA, SAMtools, ANNOVAR\), based on my MS thesis analysis\.

- Category: games
- Work types: source\-reconstruction
- Targets: Unknown
- Project status: unknown
- Listing updated: 2026\-10\-12T13:36:46\.250Z
- Listing first published: 2026\-10\-12T07:52:06\.756Z

## Repository

- Repository: [mehwar\-1/wes\-variant\-calling\-pipeline](<https://github.com/mehwar-1/wes-variant-calling-pipeline>)
- License: Not specified
- Repository stars: 0
- Stars checked: 2026\-10\-08T11:21:48\.368Z
- Repository metadata checked: 2026\-10\-08T11:21:48\.368Z

## Progress

Each value describes only its stated scope. An observation date is when DecompHub read the source; it is not a publisher measurement date.

### Checklist completion

- Value: approximately 50 %
- Scope: WES Variant\-Calling Pipeline — Roadmap — 5/10 listed items checked; items are equally weighted
- Date (observed): 2026\-10\-12T13:36:44\.293Z
- Source: [https://github\.com/mehwar\-1/wes\-variant\-calling\-pipeline/blob/HEAD/README\.md](<https://github.com/mehwar-1/wes-variant-calling-pipeline/blob/HEAD/README.md>)

## Project details

- Languages: Nextflow

## Contributing

- Contribution status: unknown
- Help requested: Not reported
- Contribution instructions: Not reported
- Contribution source: Not reported
- Contribution information checked: Not reported
- AI contribution policy: unspecified
- AI policy source: Not reported

## Listing sources

- [Public repository metadata](<https://github.com/mehwar-1/wes-variant-calling-pipeline>)
- [Discovery query](<https://api.github.com/search/repositories?q=%22reimplementation%22+in%3Aname%2Cdescription+is%3Apublic+fork%3Afalse+created%3A2026-07-23..2026-09-14&sort=updated&order=desc&per_page=100&page=2>)

## Data notes

Descriptions remain in their recorded source language. Missing values are not inferred. Repository licensing is upstream metadata; this export does not grant rights to upstream code or assets.

Schema version: 1. [Public data documentation](<https://decomphub.com/data>).